While I wasn't playing for two days, I see about 30+ attacks, yet my whole was destroyed and never took action, my mothership was blown down 8000 segments, my interface was altered, and my base was practically destroyed all without my recollection. Is this some server problem, or some hacking?
Either way, Sir Emi is going to get it.... 
No bug. No problem. You were attacked. End of story.
Edit: Luna told me of the same thing, but also noticed that her messages were also cut-off. Could this be the same with you, John?